Lyric discussion by Ne Plus Ultra 

^^I think that may be reading a bit much into it, as song's that Colin has written about mothers aren't necessarily reflections on his mother. His writing style is rarely ever autobiographical, it's mostly story telling.

That said...the engine driver in question is experiencing a feeling that I think five_to_one described best. Hopelessness, but at the same time, something deep inside him ("my bones") just won't let go, no matter what he does to try to get rid of her ("I've written pages upon pages").

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